3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10199

Details:

PFam ID : PF10199

PFam Domain Description : Alpha and gamma adaptin binding protein p34

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 115

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10199	A5E456_LODEL_218_361	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10199	A9NUW6_PICSI_229_434	100

Sequence based PCA Plot of the family - PF10199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay