3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10197

Details:

PFam ID : PF10197

PFam Domain Description : N-terminal domain of CBF1 interacting co-repressor CIR

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 154

Average sequence length: 36.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10197	A2FV05_TRIVA_10_46	42.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10197	Q7RLC0_PLAYO_18_71	100

Sequence based PCA Plot of the family - PF10197 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=27
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay