3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10195

Details:

PFam ID : PF10195

PFam Domain Description : DNA-binding nuclear phosphoprotein p8

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 53

Average sequence length: 58.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10195	D2W1Z1_NAEGR_578_711	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10195	C7BVL3_9BILA_1_57	96.1

Sequence based PCA Plot of the family - PF10195 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay