3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10193

Details:

PFam ID : PF10193

PFam Domain Description : Telomere length regulation protein

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 119

Average sequence length: 111.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10193	D2W1Z1_NAEGR_578_711	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10193	Q4S4T2_TETNG_543_683	100

Sequence based PCA Plot of the family - PF10193 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay