3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10189

Details:

PFam ID : PF10189

PFam Domain Description : Conserved protein (DUF2356)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 42

Average sequence length: 208.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10189	B0WL93_CULQU_147_259	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10189	D0P1H9_PHYIT_212_452	100

Sequence based PCA Plot of the family - PF10189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay