3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10188

Details:

PFam ID : PF10188

PFam Domain Description : Organic solute transport protein 1

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 47

Average sequence length: 161.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10188	C1BZQ6_ESOLU_17_113	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10188	D2V2R5_NAEGR_17_197	100

Sequence based PCA Plot of the family - PF10188 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=61 Length=14
Motif2 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay