3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10187

Details:

PFam ID : PF10187

PFam Domain Description : N-terminal domain of NEFA-interacting nuclear protein NIP30

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 97

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10187	Q2U2G8_ASPOR_5_57	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10187	Q5KF28_CRYNE_18_122	98.9

Sequence based PCA Plot of the family - PF10187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay