3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10186

Details:

PFam ID : PF10186

PFam Domain Description : UV radiation resistance protein and autophagy-related subunit 14

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 238

Average sequence length: 286.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10186	E7KKE1_YEASL_2_200	44.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10186	E3KHB7_PUCGT_111_451	97.8

Sequence based PCA Plot of the family - PF10186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=284 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay