3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10183

Details:

PFam ID : PF10183

PFam Domain Description : ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 124

Average sequence length: 98.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10183	A8J843_CHLRE_16_108	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10183	D2VUV8_NAEGR_6_122	100

Sequence based PCA Plot of the family - PF10183 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay