3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10180

Details:

PFam ID : PF10180

PFam Domain Description : Uncharacterised conserved protein (DUF2373)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 101

Average sequence length: 67.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10180	C5E3H9_LACTC_87_187	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10180	D7FLY2_ECTSI_84_165	100

Sequence based PCA Plot of the family - PF10180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay