3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10179

Details:

PFam ID : PF10179

PFam Domain Description : Uncharacterised conserved protein (DUF2369)

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 41

Average sequence length: 234.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10179	A6QPN7_BOVIN_2_88	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10179	E7F019_DANRE_228_568	100

Sequence based PCA Plot of the family - PF10179 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay