3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10178

Details:

PFam ID : PF10178

PFam Domain Description : Uncharacterised conserved protein (DUF2372)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 55

Average sequence length: 89.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10178	Q5GAV3_MAIZE_63_122	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10178	Q00W73_OSTTA_31_128	100

Sequence based PCA Plot of the family - PF10178 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay