3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10175

Details:

PFam ID : PF10175

PFam Domain Description : M-phase phosphoprotein 6

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 65

Average sequence length: 101.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10175	C5LGN7_9ALVE_12_107	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10175	A9TB75_PHYPA_11_137	100

Sequence based PCA Plot of the family - PF10175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay