3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10173

Details:

PFam ID : PF10173

PFam Domain Description : Mitochondrial K+-H+ exchange-related

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 87

Average sequence length: 182.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10173	E7R096_PICAD_85_188	83.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10173	Q6C9B6_YARLI_2_214	100

Sequence based PCA Plot of the family - PF10173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=23
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay