3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10172

Details:

PFam ID : PF10172

PFam Domain Description : Det1 complexing ubiquitin ligase

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 51

Average sequence length: 59.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10172	A9RGW3_PHYPA_1_39	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10172	D8RIB4_SELML_3_69	100

Sequence based PCA Plot of the family - PF10172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay