3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10171

Details:

PFam ID : PF10171

PFam Domain Description : Uncharacterised conserved protein (DUF2366)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 46

Average sequence length: 152.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10171	E1GLK5_LOALO_1_105	68.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10171	C4WUL3_ACYPI_25_197	100

Sequence based PCA Plot of the family - PF10171 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay