3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10169

Details:

PFam ID : PF10169

PFam Domain Description : Learning-associated protein

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 46

Average sequence length: 122.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10169	C3KGS1_ANOFI_1_84	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10169	E0VJV1_PEDHC_3_151	100

Sequence based PCA Plot of the family - PF10169 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=112 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay