3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10168

Details:

PFam ID : PF10168

PFam Domain Description : Nuclear pore component

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 93

Average sequence length: 314.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10168	Q758C0_ASHGO_89_162	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10168	D7T4Q9_VITVI_459_779	98.9

Sequence based PCA Plot of the family - PF10168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay