3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10165

Details:

PFam ID : PF10165

PFam Domain Description : Guanine nucleotide exchange factor synembryn

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 120

Average sequence length: 365.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10165	Q4TDS8_TETNG_25_374	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10165	B3RUD0_TRIAD_85_585	100

Sequence based PCA Plot of the family - PF10165 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=403 Length=8
Motif2 Start=77 Length=8
Motif3 Start=447 Length=8
Motif4 Start=465 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay