3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10162

Details:

PFam ID : PF10162

PFam Domain Description : G8 domain

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 192

Average sequence length: 124.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10162	B4WQF0_9SYNE_24_166	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10162	B4WQF0_9SYNE_24_166	100

Sequence based PCA Plot of the family - PF10162 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=34 Length=8
Motif3 Start=5 Length=8
Motif4 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay