3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10154

Details:

PFam ID : PF10154

PFam Domain Description : Uncharacterized conserved protein (DUF2362)

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 53

Average sequence length: 312.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10154	A8NYB9_BRUMA_46_359	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10154	B3SDI7_TRIAD_12_537	100

Sequence based PCA Plot of the family - PF10154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=174 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay