3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10153

Details:

PFam ID : PF10153

PFam Domain Description : Uncharacterised conserved protein (DUF2361)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 100

Average sequence length: 108.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10153	B4F8F7_MAIZE_1_43	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10153	EFG1P_USTMA_70_212	100

Sequence based PCA Plot of the family - PF10153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay