3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10144

Details:

PFam ID : PF10144

PFam Domain Description : Bacterial virulence factor haemolysin

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 122

Average sequence length: 198.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10144	A6F6B1_9GAMM_38_237	52.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10144	E9CMR4_9ENTR_1_209	100

Sequence based PCA Plot of the family - PF10144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=83 Length=8
Motif4 Start=137 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay