3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10143

Details:

PFam ID : PF10143

PFam Domain Description : 2,3-bisphosphoglycerate-independent phosphoglycerate mutase

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 324

Average sequence length: 171.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10143	A0DSU5_PARTE_33_173	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10143	D8P8E9_9BACT_37_219	100

Sequence based PCA Plot of the family - PF10143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=55 Length=8
Motif3 Start=38 Length=11
Motif4 Start=183 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay