3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10140

Details:

PFam ID : PF10140

PFam Domain Description : WXG100 protein secretion system (Wss), protein YukC

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 60

Average sequence length: 330.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10140	E3ZBZ8_LISIV_1_93	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10140	E6M9J2_STALU_27_388	100

Sequence based PCA Plot of the family - PF10140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=117 Length=8
Motif3 Start=258 Length=8
Motif4 Start=296 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay