3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10129

Details:

PFam ID : PF10129

PFam Domain Description : OpgC protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 188

Average sequence length: 340.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10129	D4F696_EDWTA_1_225	89.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10129	B8H6S2_ARTCA_440_823	100

Sequence based PCA Plot of the family - PF10129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=127 Length=8
Motif3 Start=291 Length=11
Motif4 Start=182 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay