3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10128

Details:

PFam ID : PF10128

PFam Domain Description : Glucose-6-phosphate dehydrogenase subunit

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 210

Average sequence length: 261.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10128	A9F2T3_SORC5_72_363	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10128	E8R0A4_ISOPI_74_392	100

Sequence based PCA Plot of the family - PF10128 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=171 Length=8
Motif3 Start=65 Length=14
Motif4 Start=122 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay