3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10124

Details:

PFam ID : PF10124

PFam Domain Description : Mu-like prophage major head subunit gpT

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 198

Average sequence length: 162.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10124	D1NC85_HAEIF_1_154	18

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10124	E0SH88_DICD3_487_575	100

Sequence based PCA Plot of the family - PF10124 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=252 Length=8
Motif2 Start=209 Length=8
Motif3 Start=39 Length=8
Motif4 Start=122 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay