3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10123

Details:

PFam ID : PF10123

PFam Domain Description : Mu-like prophage I protein

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 149

Average sequence length: 247.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10123	C5S0Q0_9PAST_21_95	83

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10123	B9Z508_9NEIS_43_358	100

Sequence based PCA Plot of the family - PF10123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=50 Length=8
Motif3 Start=1 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay