3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10122

Details:

PFam ID : PF10122

PFam Domain Description : Mu-like prophage protein Com

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 56

Average sequence length: 45.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10122	E3PS01_CLOSD_1_54	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10122	E3PS01_CLOSD_1_54	96.3

Sequence based PCA Plot of the family - PF10122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay