3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10117

Details:

PFam ID : PF10117

PFam Domain Description : McrBC 5-methylcytosine restriction system component

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 290

Average sequence length: 291.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10117	A3YQ85_CAMJE_1_46	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10117	Q4FV58_PSYA2_73_462	100

Sequence based PCA Plot of the family - PF10117 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=174 Length=11
Motif3 Start=46 Length=11
Motif4 Start=269 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay