3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10115

Details:

PFam ID : PF10115

PFam Domain Description : Transcriptional activator HlyU

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 68

Average sequence length: 89.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10115	D5N8M7_9BURK_1_71	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10115	F2J0H2_9PROT_1_93	100

Sequence based PCA Plot of the family - PF10115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=26 Length=8
Motif3 Start=80 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay