3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10113

Details:

PFam ID : PF10113

PFam Domain Description : Fibrinogen alpha C domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 20

Average sequence length: 480.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10113	Q8TZB8_METKA_1_511	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10113	Q8TZB8_METKA_1_511	100

Sequence based PCA Plot of the family - PF10113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=52 Length=8
Motif2 Start=123 Length=8
Motif3 Start=309 Length=17
Motif4 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay