3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10112

Details:

PFam ID : PF10112

PFam Domain Description : 5-bromo-4-chloroindolyl phosphate hydrolysis protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 169

Average sequence length: 177.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10112	A3PI84_RHOS1_160_285	71.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10112	C7VUV5_ENTFA_1_171	100

Sequence based PCA Plot of the family - PF10112 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=180 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay