3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10111

Details:

PFam ID : PF10111

PFam Domain Description : Glycosyltransferase like family 2

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 163

Average sequence length: 191.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10111	E4W2W5_BACFR_82_210	88.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10111	E4MSL4_CAPOC_12_260	100

Sequence based PCA Plot of the family - PF10111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=201 Length=8
Motif3 Start=1 Length=8
Motif4 Start=191 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay