3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10110

Details:

PFam ID : PF10110

PFam Domain Description : Membrane domain of glycerophosphoryl diester phosphodiesterase

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 154

Average sequence length: 135.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10110	C7CQD2_ENTFA_1_85	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10110	B2GJR4_KOCRD_45_207	100

Sequence based PCA Plot of the family - PF10110 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay