3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10105

Details:

PFam ID : PF10105

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2344)

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 338

Average sequence length: 180.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10105	A6GIK7_9DELT_725_938	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10105	A6GIK7_9DELT_725_938	99.7

Sequence based PCA Plot of the family - PF10105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=53 Length=8
Motif3 Start=3 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay