3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10104

Details:

PFam ID : PF10104

PFam Domain Description : Di-sulfide bridge nucleocytoplasmic transport domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 100

Average sequence length: 126.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10104	C9SBP2_VERA1_2_95	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10104	Q6FRL2_CANGA_32_172	100

Sequence based PCA Plot of the family - PF10104 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay