3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10103

Details:

PFam ID : PF10103

PFam Domain Description : Uncharacterised conserved protein (DUF2342)

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 247

Average sequence length: 313.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10103	C4FDR6_9BIFI_306_491	93.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10103	C7R120_JONDD_13_365	100

Sequence based PCA Plot of the family - PF10103 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=373 Length=8
Motif2 Start=284 Length=8
Motif3 Start=212 Length=8
Motif4 Start=362 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay