3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10102

Details:

PFam ID : PF10102

PFam Domain Description : Domain of unknown function (DUF2341)

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 114

Average sequence length: 87.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10102	D2EGT3_9EURY_69_173	58.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10102	D2EGT3_9EURY_69_173	100

Sequence based PCA Plot of the family - PF10102 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=81 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay