3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10100

Details:

PFam ID : PF10100

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2338)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 22

Average sequence length: 377.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10100	E5BMZ3_9FUSO_1_164	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10100	Q8CTX9_STAES_1_430	100

Sequence based PCA Plot of the family - PF10100 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=86 Length=8
Motif2 Start=128 Length=18
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay