3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10099

Details:

PFam ID : PF10099

PFam Domain Description : Anti-sigma-K factor rskA

Number of Sequence in 50% Dataset : 250

Number of Sequence in Full Dataset : 428

Average sequence length: 182.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10099	Q1YNC2_MOBAS_86_377	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10099	A7NKV5_ROSCS_196_313	99.7

Sequence based PCA Plot of the family - PF10099 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=97 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay