3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10098

Details:

PFam ID : PF10098

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2336)

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 241

Average sequence length: 226.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10098	Q1YNC2_MOBAS_86_377	60.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10098	E8TMQ6_MESCW_115_230	100

Sequence based PCA Plot of the family - PF10098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=8
Motif2 Start=2 Length=8
Motif3 Start=28 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay