3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10096

Details:

PFam ID : PF10096

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2334)

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 130

Average sequence length: 216.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10096	A6UV77_META3_44_251	82.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10096	F2UUF1_ACTVI_314_595	100

Sequence based PCA Plot of the family - PF10096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=79 Length=8
Motif2 Start=4 Length=8
Motif3 Start=209 Length=8
Motif4 Start=250 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay