3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10092

Details:

PFam ID : PF10092

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2330)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 79

Average sequence length: 292.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10092	A9GEE2_SORC5_37_400	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10092	C7QAA7_CATAD_26_333	100

Sequence based PCA Plot of the family - PF10092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay