3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10090

Details:

PFam ID : PF10090

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2328)

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 124

Average sequence length: 175.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10090	D3P653_AZOS1_31_224	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10090	D3P653_AZOS1_31_224	100

Sequence based PCA Plot of the family - PF10090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=170 Length=8
Motif2 Start=121 Length=8
Motif3 Start=39 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay