3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10088

Details:

PFam ID : PF10088

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2326)

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 105

Average sequence length: 131.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10088	A3W8N1_9RHOB_1_97	89.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10088	D5VZW6_CLOB2_448_596	100

Sequence based PCA Plot of the family - PF10088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=49 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay