3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10087

Details:

PFam ID : PF10087

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2325)

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 233

Average sequence length: 91.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10087	Q3F0X6_BACTI_266_356	25.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10087	A4JRQ0_BURVG_65_164	100

Sequence based PCA Plot of the family - PF10087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay