3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10079

Details:

PFam ID : PF10079

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2317)

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 157

Average sequence length: 513.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10079	A8DW94_NEMVE_2_85	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10079	Y419_PROVI_6_563	100

Sequence based PCA Plot of the family - PF10079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=93 Length=20
Motif2 Start=331 Length=43
Motif3 Start=131 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay