3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10077

Details:

PFam ID : PF10077

PFam Domain Description : Uncharacterized protein conserved in bacteria (DUF2314)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 105

Average sequence length: 113.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10077	D3BNX8_POLPA_96_200	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10077	A1KBX9_AZOSB_2_66	100

Sequence based PCA Plot of the family - PF10077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=1 Length=18
Motif3 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay